2011 Publications
Aberrant Overexpression of Satellite Repeats in Pancreatic and Other Epithelial Cancers
Ting DT, Lipson D, Paul S, Brannigan B, Akhavanfard S, Coffman EJ, Contino G, Deshpande V, Iafrate AJ, Letovsky S, Rivera MN, Bardeesy N, Maheswaran S, Haber DA
Science
Mapping the regulon of Vibrio cholerae ferric uptake regulator expands its known network of gene regulation
Davies BW, Bogard RW, Mekalanos JJ
Proceedings of National Academy of Science USA
Unamplified cap analysis of gene expression on a single-molecule sequencer
Kanamori-Katayama M, Itoh M, Kawaji H, Lassmann T, Katayama S, Kojima S, Bertin N, Kaiho A Ninomiya N, Daub CO, Carninci P, Forrest A, and Hayashizaki Y
Genome Research
Protocol Dependence of Sequencing-Based Gene Expression Measurements
Raz T, Kapranov P, Lipson D, Letovsky S, Milos PM, Thompson JF
PLoS ONE
Genome-wide mapping of 5-hydroxymethylcytosine in embryonic stem cells.
Pastor WA, Pape UJ, Huang Y, Henderson HR, Lister R, Ko M, McLoughlin EM, Brudno Y, Mahapatra S, Kapranov P, Tahiliani M, Daley GQ, Liu XS, Ecker JR, Milos PM, Agarwal S, Rao A.
Nature
Next-generation sequencing technologies and applications for human genetic history and forensics
Berglund EC, Kiialainen A, Syvänen AC
Investigative Genetics
Toward knowing the whole human: next-generation sequencing for personalized medicine
Toma I, St Laurent G, McCaffrey TA
Personalized Medicine
Mandlik A, Livny J, Robins W, Ritchie J, Mekalanos J, Waldor M
Cell Host & Microbe Single-molecule direct RNA sequencing without cDNA synthesis.
Ozsolak F, Milos PM.
Wiley Interdisciplinary Reviews RNA
True single-molecule DNA sequencing of a pleistocene horse bone.
Orlando L ,Ginolhac A, Raghavan M, Vilstrup J, Rasmussen M, Magnussen K,
Steinmann KE, Kapranov P, Thompson JF, Zazula G, Froese D, Moltke I,
Shapiro B, Hofreiter M, Al-Rasheid KA, Gilbert MT, Willerslev E.
Genome Research
Transcriptome profiling using single-molecule direct RNA sequencing.
Ozsolak F, Milos PM.
Methods Molecular Biology
RNA sequencing and quantitation using the Helicos Genetic Analysis System
Raz T, Causey M, Jones DR, Kieu A, Letovsky S, Lipson D, Thayer E, Thompson JF, Milos PM.
Methods Molecular Biology
Helicos single-molecule sequencing of bacterial genomes.
Steinmann KE, Hart CE, Thompson JF, Milos PM.
Methods Molecular Biology
The properties and applications of single-molecule DNA sequencing.
Thompson JF, Milos PM.
Genome Biology
A Comparison of Single Molecule and Amplification Based Sequencing of Cancer Transcriptomes
Sam LT, Lipson D, Raz T, Cao X, Thompson J, Milos PM, Robinson D, Chinnaiyan AM, Kumar-Sinha C, Maher CA
PLoS ONE
