Comprehensive Polyadenylation Site Maps in Yeast and Human Reveal Pervasive Alternative Polyadenylation
Ozsolak F, Kapranov P, Foissac S, Kim SW, Fishilevich E, Monaghan AP, John B, Milos PM
Cell

Single molecule sequencing with a HeliScope genetic analysis system.
Thompson JF, Steinmann KE.
Current Protocols Molecular Biology

Single-molecule DNA analysis.
Efcavitch JW, Thompson JF.
Annual Reviews Analytical Chemistry

Single-molecule sequencing: sequence methods to enable accurate quantitation.
Hart C, Lipson D, Ozsolak F, Raz T, Steinmann K, Thompson J, Milos PM.
Methods Enzymology

Digital transcriptome profiling from attomole-level RNA samples.
Ozsolak F, Goren A, Gymrek M, Guttman M, Regev A, Bernstein BE, Milos PM.
Genome Research

The majority of total nuclear-encoded non-ribosomal RNA in a human cell is ‘dark matter’un-annotated RNA
Kapranov P, St Laurent G, Raz T , Ozsolak F, Reynolds CP , Sorensen P, Reaman G, Milos P, Arceci RJ, Thompson JF, Triche TJ
BMC Biology
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Novel class of human RNAs associated with gene termini suggests an uncharacterized RNA copying mechanism
​ Kapranov P, Ozsolak F, Kim SW, Foissac S, Lipson D, Hart C, Roels S, Borel C, Antonarakis SE, Monaghan AP, John B, Milos PM
​ Nature
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Amplification-free digital gene expression profiling from minute cell quantities
Ozsolak F, Ting DT, Wittner BS, Brannigan BW, Paul S, Bardeesy N, Ramaswamy S, Milos PM,Haber DA
Nature Methods

Next Generation Sequencing for Clinical Diagnostics-Principles and Application to Targeted Resequencing for Hypertrophic Cardiomyopathy: A Paper from the 2009 William Beaumont Hospital Symposium on Molecular Pathology
Voelkerding KV, Dames SJ, Durtschi JD
Journal of Molecular Diagnostics
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Chromatin profiling by directly sequencing small quantities of immunoprecipitated DNA
Goren A, Ozsolak F, Shores N, Ku M, Adli M, HartC, Gymrek M, Zuk O, Regev A, Milos PM & Bernstein B
​ Nature Methods